STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1789PFAM: regulatory protein TetR; KEGG: sgr:SGR_6910 TetR family transcriptional regulator. (194 aa)    
Predicted Functional Partners:
Afer_0665
PFAM: NMT1/THI5 like domain protein; KEGG: rpc:RPC_0844 ABC transporter substrate- binding protein.
  
     0.660
Afer_0118
KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein.
 
     0.565
Afer_1851
PFAM: regulatory protein TetR; KEGG: msm:MSMEG_5282 transcriptional regulator.
  
     0.564
Afer_0556
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO5045 hypothetical protein.
  
     0.543
Afer_0256
PFAM: metallophosphoesterase; KEGG: pzu:PHZ_c0307 3',5'-cyclic-nucleotide phosphodiesterase.
  
     0.505
Afer_0886
PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein.
  
     0.479
Afer_1637
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO2893 hypothetical protein.
  
     0.469
Afer_0282
Hypothetical protein; KEGG: rha:RHA1_ro01864 mycothiol-dependent maleylpyruvate isomerase.
  
     0.459
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
  
  
 0.452
Afer_1965
PFAM: amidohydrolase 2; KEGG: sen:SACE_3096 amidohydrolase 2.
  
     0.452
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.