STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1851PFAM: regulatory protein TetR; KEGG: msm:MSMEG_5282 transcriptional regulator. (162 aa)    
Predicted Functional Partners:
Afer_1849
PFAM: glycosyl transferase family 20; KEGG: sco:SCO4290 trehalose-phosphate synthase.
       0.668
Afer_1850
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase; PFAM: trehalose-phosphatase; KEGG: saq:Sare_0810 HAD family hydrolase.
       0.668
Afer_1789
PFAM: regulatory protein TetR; KEGG: sgr:SGR_6910 TetR family transcriptional regulator.
  
     0.564
Afer_0118
KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein.
 
     0.537
Afer_1784
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein.
  
     0.527
Afer_1848
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.441
Afer_0665
PFAM: NMT1/THI5 like domain protein; KEGG: rpc:RPC_0844 ABC transporter substrate- binding protein.
  
     0.430
Afer_1637
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO2893 hypothetical protein.
  
     0.428
Afer_1847
PFAM: thiamineS protein; KEGG: hya:HY04AAS1_0115 MoaD family protein.
       0.414
Afer_1917
TIGRFAM: anti-sigma factor; KEGG: saq:Sare_4094 anti-sigma factor RshA.
  
     0.414
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.