STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1969PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region. (487 aa)    
Predicted Functional Partners:
Afer_1970
PFAM: Acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase.
 
     0.813
Afer_1325
PFAM: amino acid permease-associated region; KEGG: mmi:MMAR_2052 amino acid transporter.
  
     0.774
Afer_1181
PFAM: amino acid permease-associated region; KEGG: afe:Lferr_0867 amino acid permease-associated region.
  
     0.729
Afer_1968
PFAM: amino acid permease-associated region; KEGG: mva:Mvan_2919 amino acid permease-associated region.
 
    
0.668
Afer_1934
KEGG: bvi:Bcep1808_7294 tungstate/molybdate binding protein.
  
     0.589
Afer_1897
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro01635 permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
  
    0.557
Afer_1965
PFAM: amidohydrolase 2; KEGG: sen:SACE_3096 amidohydrolase 2.
 
     0.542
Afer_1434
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mse:Msed_0866 general substrate transporter.
  
   0.488
Afer_0325
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: acr:Acry_3608 general substrate transporter.
  
     0.479
Afer_0196
PFAM: Peptidase S53 propeptide; KEGG: cac:CAC0625 periplasmic aspartyl protease.
  
     0.457
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.