STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1970PFAM: Acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase. (342 aa)    
Predicted Functional Partners:
Afer_1969
PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region.
 
     0.813
Afer_0168
PFAM: MgtC/SapB transporter; KEGG: cyb:CYB_2116 MgtC family protein.
   
    0.590
Afer_1968
PFAM: amino acid permease-associated region; KEGG: mva:Mvan_2919 amino acid permease-associated region.
       0.542
Afer_0461
PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_2580 ATP-dependent DNA helicase PcrA.
 
      0.491
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
  
     0.432
Afer_0287
PFAM: Negative transcriptional regulator; KEGG: sen:SACE_2130 hypothetical protein.
  
     0.414
Afer_1560
PFAM: beta-lactamase; KEGG: sen:SACE_2212 beta-lactamase.
  
     0.410
Afer_1971
PFAM: glycosyl transferase family 2; KEGG: mpo:Mpop_1840 glycosyl transferase family 2.
       0.409
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.