STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_2006PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: bte:BTH_I2402 glycosy hydrolase family protein. (1194 aa)    
Predicted Functional Partners:
Afer_0544
Hypothetical protein; KEGG: GSVIVT00021647001; assembled CDS.
  
 
 0.917
Afer_1631
PFAM: protein of unknown function DUF255; KEGG: nfa:nfa48210 hypothetical protein.
   
 
 0.903
Afer_0020
Chitinase; KEGG: aau:AAur_3218 putative glycosyl hydrolase family protein; PFAM: Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII.
 
   
0.626
Afer_1600
Hypothetical protein; KEGG: glycoside hydrolase family 5 protein.
 
   
 0.595
Afer_2007
TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: neu:NE0113 hypothetical protein.
 
   
 0.572
Afer_0927
PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: bam:Bamb_0766 curculin domain-containing protein.
     
 0.543
Afer_0785
Hypothetical protein; KEGG: cbe:Cbei_2588 collagen triple helix repeat.
     
 0.538
Afer_0445
PFAM: membrane protein of uknown function UCP014873; KEGG: bcs:BCAN_B0338 hypothetical protein.
  
     0.481
Afer_0065
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.463
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
   
 0.460
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.