STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_2021PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pas:Pars_0521 extradiol ring-cleavage dioxygenase III subunit B. (287 aa)    
Predicted Functional Partners:
Afer_2022
KEGG: msm:MSMEG_4035 citrate synthase.
 
     0.943
Afer_2025
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rxy:Rxyl_0206 hypothetical protein.
 
     0.856
Afer_2024
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: cgt:cgR_2273 hypothetical protein.
 
     0.823
Afer_2020
Hypothetical protein.
       0.809
Afer_2023
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: krh:KRH_05070 L-carnitine dehydratase/bile acid-inducible protein F family protein; Belongs to the CoA-transferase III family.
       0.715
Afer_1182
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mkm:Mkms_5833 4-oxalocrotonate decarboxylase.
 
  
 0.546
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.456
Afer_0580
PFAM: conserved hypothetical protein; KEGG: fal:FRAAL0333 hypothetical protein.
  
     0.409
Afer_1866
PFAM: restriction endonuclease XhoI; KEGG: mbn:Mboo_2338 type II site-specific deoxyribonuclease.
  
     0.400
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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