STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ74362.1Outer membrane protein (porin). (340 aa)    
Predicted Functional Partners:
SEA19303.1
TolB protein.
    
 
 0.901
SEA12361.1
Outer membrane autotransporter barrel domain-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.877
SEA28526.1
Outer membrane protein beta-barrel domain-containing protein.
   
 
 0.877
SEA54123.1
Type II secretion system protein C.
    
 
 0.800
SDZ93904.1
Vitamin B12 transporter.
    
 
 0.794
SEB07661.1
Beta-barrel assembly machine subunit BamC.
  
     0.573
SDZ87657.1
Conserved hypothetical protein.
  
     0.561
SDZ84793.1
Trypsin-like peptidase domain-containing protein.
  
 
   0.546
SEA97503.1
Hypothetical protein.
  
     0.537
SDZ74438.1
FAD/FMN-containing dehydrogenase.
 
     0.513
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.