rpsT protein (Thiothrix caldifontis) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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Score

rpsT

Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)

Predicted Functional Partners:

SDZ72869.1

0.996

rplM

0.996

rpsI

0.996

rpsJ

0.996

rpsD

0.996

rpmE2

0.996

rplU

0.996

rpmA

0.996

rpmF

0.996

rpsO

0.996

Your Current Organism:

Thiothrix caldifontis

NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ72869.1	rplM	SAMN05660964_00001	SAMN05660964_00090	Hypothetical protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.995
SDZ72869.1	rplU	SAMN05660964_00001	SAMN05660964_00664	Hypothetical protein.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
SDZ72869.1	rpmA	SAMN05660964_00001	SAMN05660964_00665	Hypothetical protein.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.993
SDZ72869.1	rpmE2	SAMN05660964_00001	SAMN05660964_00548	Hypothetical protein.	Large subunit ribosomal protein L31.	0.989
SDZ72869.1	rpmF	SAMN05660964_00001	SAMN05660964_01295	Hypothetical protein.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.995
SDZ72869.1	rpsD	SAMN05660964_00001	SAMN05660964_00220	Hypothetical protein.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.993
SDZ72869.1	rpsI	SAMN05660964_00001	SAMN05660964_00091	Hypothetical protein.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.993
SDZ72869.1	rpsJ	SAMN05660964_00001	SAMN05660964_00195	Hypothetical protein.	Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.991
SDZ72869.1	rpsO	SAMN05660964_00001	SAMN05660964_01371	Hypothetical protein.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995
SDZ72869.1	rpsT	SAMN05660964_00001	SAMN05660964_00229	Hypothetical protein.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.996
rplM	SDZ72869.1	SAMN05660964_00090	SAMN05660964_00001	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Hypothetical protein.	0.995
rplM	rplU	SAMN05660964_00090	SAMN05660964_00664	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rpmA	SAMN05660964_00090	SAMN05660964_00665	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmE2	SAMN05660964_00090	SAMN05660964_00548	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L31.	0.996
rplM	rpmF	SAMN05660964_00090	SAMN05660964_01295	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplM	rpsD	SAMN05660964_00090	SAMN05660964_00220	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplM	rpsI	SAMN05660964_00090	SAMN05660964_00091	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsJ	SAMN05660964_00090	SAMN05660964_00195	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rplM	rpsO	SAMN05660964_00090	SAMN05660964_01371	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplM	rpsT	SAMN05660964_00090	SAMN05660964_00229	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.996