STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ99153.1Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain. (540 aa)    
Predicted Functional Partners:
SEA86172.1
NfeD-like C-terminal, partner-binding.
 
  
 0.776
SEA23413.1
Phage shock protein A (PspA) family protein.
 
  
 0.769
SEA91369.1
Hypothetical protein.
  
  
 0.744
SEB09865.1
Leucine Rich repeat-containing protein.
  
 
  0.626
SEA38734.1
Leucine Rich repeat-containing protein.
  
 
  0.622
SEA48625.1
Small GTP-binding protein domain-containing protein.
  
 
  0.602
SEA40287.1
C-terminal of Roc, COR, domain.
  
 
  0.601
SEA69955.1
C-terminal of Roc, COR, domain.
    
  0.549
SEA76780.1
TIR domain-containing protein.
    
  0.549
SDZ99118.1
Hypothetical protein.
  
    0.509
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.