STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA12999.1XisH protein. (139 aa)    
Predicted Functional Partners:
SEA12964.1
XisI protein.
 
     0.946
SEB09880.1
XisI protein.
 
     0.779
SEA59312.1
XisI protein.
  
     0.775
SEB02841.1
HNH endonuclease.
  
     0.754
SEA13077.1
Endonuclease, Uma2 family (restriction endonuclease fold).
 
     0.718
SEA13114.1
Endonuclease, Uma2 family (restriction endonuclease fold).
 
     0.713
SEA94163.1
Predicted nucleic acid-binding protein, contains PIN domain.
  
     0.704
SDZ76113.1
Predicted nucleic acid-binding protein, contains PIN domain.
  
     0.669
SEB08945.1
CRISPR-associated protein Csx16.
  
     0.669
SDZ97664.1
DNA adenine methylase.
  
     0.662
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.