STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA20414.1Carboxysome peptide A. (83 aa)    
Predicted Functional Partners:
SEA20481.1
BMC domain-containing protein.
 
 
 
 0.988
SEA20521.1
BMC domain-containing protein.
 
 
 
 0.986
SEA20110.1
Hypothetical protein.
 
 
 
 0.978
SEA20339.1
Carboxysome shell peptide mid-region.
 
     0.946
SEA20307.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
 
 
 
 0.835
SEA20451.1
Carboxysome peptide B.
 
    
0.808
SEA20373.1
Carboxysome shell carbonic anhydrase.
       0.796
SEA20755.1
Nitrogen regulatory protein P-II family.
 
     0.772
SEA20720.1
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.733
cbbL-2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.720
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.