STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA33536.1Uncharacterized conserved protein YbgA, DUF1722 family. (321 aa)    
Predicted Functional Partners:
SEA94093.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
  
  
 0.925
SEA33584.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
 0.813
SEA39471.1
tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain.
 
     0.703
SEA94073.1
MerR HTH family regulatory protein.
 
    0.660
SEA33619.1
Agmatine/peptidylarginine deiminase; Belongs to the agmatine deiminase family.
       0.505
SEA33657.1
N-carbamoylputrescine amidase.
       0.505
SDZ94574.1
ChrR Cupin-like domain-containing protein.
     
 0.503
SDZ99931.1
Uncharacterized protein involved in outer membrane biogenesis.
 
     0.477
SDZ95258.1
Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase.
  
  
  0.461
SEA88388.1
Thioredoxin reductase (NADPH).
   
   0.457
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.