STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA40789.1CBS domain-containing protein. (138 aa)    
Predicted Functional Partners:
SEA93413.1
Glutamate synthase (ferredoxin).
    
 0.895
SEA92074.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.862
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
 0.811
SEA81730.1
Signal transduction histidine kinase.
  
  
 0.730
SEB13285.1
Hypothetical protein.
  
 
  0.718
SEA60911.1
CBS domain-containing protein.
 
  
  0.678
SEA19653.1
PAS domain S-box-containing protein.
 
  
 0.626
SEB14210.1
Signal transduction histidine kinase.
 
  
 0.621
SDZ73962.1
Hpt domain-containing protein.
    
 0.564
SEA28085.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 
  0.551
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.