STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA48250.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
SEA48281.1
Baseplate J-like protein.
       0.773
SEA48182.1
PAAR motif-containing protein.
       0.689
SEA48221.1
Hypothetical protein.
       0.689
SEA48051.1
Conserved hypothetical phage tail region protein.
       0.657
SEA48088.1
Hypothetical protein.
       0.657
SEA48120.1
Hypothetical protein.
       0.657
SEA48150.1
Rhs element Vgr protein.
       0.657
SEA48315.1
Hypothetical protein.
       0.648
SEA48021.1
Conserved hypothetical phage tail region protein.
       0.640
SEA48351.1
Hypothetical protein.
       0.584
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.