Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ83939.1 | SEA66293.1 | SAMN05660964_00359 | SAMN05660964_02109 | Selenocysteine lyase/Cysteine desulfurase. | AhpC/TSA family protein. | 0.512 |
SDZ83939.1 | SEA88388.1 | SAMN05660964_00359 | SAMN05660964_02702 | Selenocysteine lyase/Cysteine desulfurase. | Thioredoxin reductase (NADPH). | 0.807 |
SDZ83939.1 | SEB04070.1 | SAMN05660964_00359 | SAMN05660964_03260 | Selenocysteine lyase/Cysteine desulfurase. | Cysteine desulfuration protein SufE. | 0.980 |
SDZ83939.1 | SEB12575.1 | SAMN05660964_00359 | SAMN05660964_03680 | Selenocysteine lyase/Cysteine desulfurase. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. | 0.446 |
SDZ83939.1 | iscS | SAMN05660964_00359 | SAMN05660964_02454 | Selenocysteine lyase/Cysteine desulfurase. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.446 |
SDZ83939.1 | selD | SAMN05660964_00359 | SAMN05660964_02028 | Selenocysteine lyase/Cysteine desulfurase. | Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. | 0.807 |
SEA62314.1 | SEA62358.1 | SAMN05660964_02029 | SAMN05660964_02030 | Oligopeptide transport system permease protein. | Oligopeptide transport system permease protein. | 0.999 |
SEA62314.1 | SEA62384.1 | SAMN05660964_02029 | SAMN05660964_02031 | Oligopeptide transport system permease protein. | Hypothetical protein. | 0.512 |
SEA62314.1 | selD | SAMN05660964_02029 | SAMN05660964_02028 | Oligopeptide transport system permease protein. | Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. | 0.594 |
SEA62314.1 | selU | SAMN05660964_02029 | SAMN05660964_02027 | Oligopeptide transport system permease protein. | tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. | 0.601 |
SEA62358.1 | SEA62314.1 | SAMN05660964_02030 | SAMN05660964_02029 | Oligopeptide transport system permease protein. | Oligopeptide transport system permease protein. | 0.999 |
SEA62358.1 | SEA62384.1 | SAMN05660964_02030 | SAMN05660964_02031 | Oligopeptide transport system permease protein. | Hypothetical protein. | 0.512 |
SEA62358.1 | selD | SAMN05660964_02030 | SAMN05660964_02028 | Oligopeptide transport system permease protein. | Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. | 0.594 |
SEA62358.1 | selU | SAMN05660964_02030 | SAMN05660964_02027 | Oligopeptide transport system permease protein. | tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. | 0.594 |
SEA62384.1 | SEA62314.1 | SAMN05660964_02031 | SAMN05660964_02029 | Hypothetical protein. | Oligopeptide transport system permease protein. | 0.512 |
SEA62384.1 | SEA62358.1 | SAMN05660964_02031 | SAMN05660964_02030 | Hypothetical protein. | Oligopeptide transport system permease protein. | 0.512 |
SEA62384.1 | selD | SAMN05660964_02031 | SAMN05660964_02028 | Hypothetical protein. | Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. | 0.406 |
SEA62384.1 | selU | SAMN05660964_02031 | SAMN05660964_02027 | Hypothetical protein. | tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. | 0.406 |
SEA66293.1 | SDZ83939.1 | SAMN05660964_02109 | SAMN05660964_00359 | AhpC/TSA family protein. | Selenocysteine lyase/Cysteine desulfurase. | 0.512 |
SEA66293.1 | SEA88388.1 | SAMN05660964_02109 | SAMN05660964_02702 | AhpC/TSA family protein. | Thioredoxin reductase (NADPH). | 0.948 |
page 1 of 3