STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA70016.1Hypothetical protein. (177 aa)    
Predicted Functional Partners:
SDZ83805.1
Hypothetical protein.
    
  0.872
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.868
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.864
SEA70054.1
Serine O-acetyltransferase.
      0.835
SEA70087.1
Homocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
     0.818
SEA69793.1
Nitrogen fixation protein NifZ.
 
 
   0.802
SEB11059.1
SIR2-like domain-containing protein.
 
     0.798
SEB11160.1
Leucine rich repeat variant.
 
     0.796
nifW
Nitrogenase-stabilizing/protective protein; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
     0.790
SEA59039.1
Ferredoxin.
  
 
  0.773
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.