STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA80812.1Hypothetical protein. (525 aa)    
Predicted Functional Partners:
SDZ87741.1
Urea transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
   0.842
SEB12675.1
Urea carboxylase.
    
  0.636
SEA53965.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.463
SEA24800.1
Uncharacterized protein YukJ.
  
     0.432
SDZ84143.1
D-alanyl-D-alanine carboxypeptidase.
  
 
  0.429
SEB07049.1
Carbohydrate binding domain-containing protein.
  
    0.414
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.