STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA87046.1Trypsin-like peptidase domain-containing protein. (233 aa)    
Predicted Functional Partners:
SDZ84116.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
  
     0.761
SEA12361.1
Outer membrane autotransporter barrel domain-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
    
 
 0.689
SEA28526.1
Outer membrane protein beta-barrel domain-containing protein.
    
 
 0.689
SEA61298.1
Anti sigma-E protein RseA, N-terminal domain.
  
 
 0.631
SEA66134.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
  
     0.596
SDZ83805.1
Hypothetical protein.
    
  0.595
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.566
SEB00521.1
acyl-CoA dehydrogenase.
    
  0.557
SEA91933.1
ferredoxin--NADP+ reductase.
  
  
  0.538
rsfS
Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
   0.505
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.