SEA87286.1 protein (Thiothrix caldifontis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEA87286.1

Sulfate permease, SulP family. (491 aa)

Predicted Functional Partners:

SEA87246.1

0.967

acpP

0.939

SEB05729.1

0.886

SEA63204.1

0.870

SEB11851.1

0.729

SDZ86672.1

0.725

SEA87309.1

0.527

SEA87222.1

0.505

SEA34253.1

0.479

SDZ92563.1

0.453

Your Current Organism:

Thiothrix caldifontis

NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ86672.1	SEA34253.1	SAMN05660964_00454	SAMN05660964_01424	Ankyrin repeat.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.944
SDZ86672.1	SEA63204.1	SAMN05660964_00454	SAMN05660964_02060	Ankyrin repeat.	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.939
SDZ86672.1	SEA87286.1	SAMN05660964_00454	SAMN05660964_02691	Ankyrin repeat.	Sulfate permease, SulP family.	0.725
SDZ86672.1	acpP	SAMN05660964_00454	SAMN05660964_01274	Ankyrin repeat.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.519
SDZ92563.1	SEA87286.1	SAMN05660964_00532	SAMN05660964_02691	Hypothetical protein.	Sulfate permease, SulP family.	0.453
SEA34253.1	SDZ86672.1	SAMN05660964_01424	SAMN05660964_00454	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Ankyrin repeat.	0.944
SEA34253.1	SEA63204.1	SAMN05660964_01424	SAMN05660964_02060	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.905
SEA34253.1	SEA87286.1	SAMN05660964_01424	SAMN05660964_02691	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Sulfate permease, SulP family.	0.479
SEA34253.1	SEB11851.1	SAMN05660964_01424	SAMN05660964_03648	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Thiosulfate sulfurtransferase.	0.997
SEA34253.1	acpP	SAMN05660964_01424	SAMN05660964_01274	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
SEA63204.1	SDZ86672.1	SAMN05660964_02060	SAMN05660964_00454	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ankyrin repeat.	0.939
SEA63204.1	SEA34253.1	SAMN05660964_02060	SAMN05660964_01424	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.905
SEA63204.1	SEA87286.1	SAMN05660964_02060	SAMN05660964_02691	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Sulfate permease, SulP family.	0.870
SEA63204.1	SEB11851.1	SAMN05660964_02060	SAMN05660964_03648	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Thiosulfate sulfurtransferase.	0.939
SEA63204.1	acpP	SAMN05660964_02060	SAMN05660964_01274	Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.861
SEA87222.1	SEA87246.1	SAMN05660964_02689	SAMN05660964_02690	Hypothetical protein.	Nucleotide-binding universal stress protein, UspA family.	0.515
SEA87222.1	SEA87286.1	SAMN05660964_02689	SAMN05660964_02691	Hypothetical protein.	Sulfate permease, SulP family.	0.505
SEA87246.1	SEA87222.1	SAMN05660964_02690	SAMN05660964_02689	Nucleotide-binding universal stress protein, UspA family.	Hypothetical protein.	0.515
SEA87246.1	SEA87286.1	SAMN05660964_02690	SAMN05660964_02691	Nucleotide-binding universal stress protein, UspA family.	Sulfate permease, SulP family.	0.967
SEA87246.1	SEA87309.1	SAMN05660964_02690	SAMN05660964_02692	Nucleotide-binding universal stress protein, UspA family.	Hypothetical protein.	0.516