STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA89960.1Hypothetical protein. (370 aa)    
Predicted Functional Partners:
SEA89993.1
CxxC motif-containing protein, DUF1111 family.
 
  
 0.973
SEA89976.1
Predicted lipoprotein.
 
  
 0.969
SEA90010.1
Putative iron-regulated protein.
 
    0.950
SEA89941.1
Porin.
 
     0.663
SEA96157.1
LVIVD repeat-containing protein.
  
     0.631
SEA89923.1
iron(III) transport system substrate-binding protein.
 
     0.570
SEA90029.1
Hemin uptake protein hemP.
       0.557
SEA90045.1
Bacterioferritin-associated ferredoxin.
  
    0.549
SEA89900.1
iron(III) transport system permease protein.
 
    0.541
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.