STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA91788.1AAA ATPase domain-containing protein. (658 aa)    
Predicted Functional Partners:
SEA91810.1
Hypothetical protein.
      0.809
SDZ75543.1
HEAT repeat.
 
 
  0.761
SEA37970.1
CHAT domain-containing protein.
  
     0.671
SDZ75568.1
Hypothetical protein.
  
 
  0.666
SEB05029.1
CHAT domain-containing protein.
  
     0.630
SDZ85298.1
Conserved repeat domain-containing protein.
  
     0.624
SDZ85269.1
Conserved repeat domain-containing protein.
  
     0.622
SEB02177.1
WD40 repeat.
  
    0.618
SEB02160.1
Hypothetical protein.
  
    0.616
SEB05084.1
AAA ATPase domain-containing protein.
  
    0.612
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.