STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA95567.1Hypothetical protein. (335 aa)    
Predicted Functional Partners:
SEA55500.1
Protein of unknown function.
  
     0.709
SEA93666.1
Uncharacterized conserved protein, contains Mth938-like domain.
 
     0.699
SDZ83292.1
Uncharacterized membrane protein.
  
     0.688
SEA85420.1
Uncharacterized membrane protein.
  
     0.659
SEA47012.1
SAM-dependent methyltransferase, MidA family.
  
     0.632
bioC
malonyl-CoA O-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
     0.623
SDZ97916.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.613
SEA49725.1
Hypothetical protein.
  
     0.603
SEA95538.1
2OG-Fe(II) oxygenase superfamily protein.
       0.539
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.507
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.