STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB01756.1Hypothetical protein. (380 aa)    
Predicted Functional Partners:
SEA92074.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.712
SEA73191.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.686
SEB13107.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.634
SEB01795.1
Carbohydrate family 9 binding domain-like.
       0.531
SDZ73269.1
comF family protein.
   
    0.514
SEB02258.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.482
SEA54806.1
Putative restriction endonuclease.
  
     0.480
SEA53303.1
TRSP domain C terminus to PRTase_2.
   
    0.463
SEA38896.1
Peptidase family M23.
  
    0.449
SEA66857.1
TPR repeat-containing protein.
  
     0.424
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.