STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB05447.1Transcriptional regulator, TetR family. (212 aa)    
Predicted Functional Partners:
SEB05464.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.773
SEB05480.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.773
SEB05432.1
HNH endonuclease.
       0.538
SEA34253.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.489
SEA34221.1
Condensation domain-containing protein.
  
   
 0.453
SEB13107.1
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.419
SEA40931.1
Signal transduction histidine kinase.
    
 
 0.410
SEB13862.1
PAS domain S-box-containing protein.
    
 
 0.409
SEB13285.1
Hypothetical protein.
    
 
 0.408
SEA81730.1
Signal transduction histidine kinase.
    
 
 0.405
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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