STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB07695.1PhoH-like ATPase. (473 aa)    
Predicted Functional Partners:
SEB07702.1
Membrane protein DedA, SNARE-associated domain.
       0.741
SEB07687.1
Peroxiredoxin Q/BCP.
       0.702
SEB07661.1
Beta-barrel assembly machine subunit BamC.
 
     0.636
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.520
SEA81242.1
Hypothetical protein.
  
     0.490
SEA27954.1
Putative serine protein kinase, PrkA.
   
  
 0.478
SEA27989.1
Hypothetical protein; Belongs to the UPF0229 family.
   
    0.465
SEB07648.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
       0.453
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.