STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB08945.1CRISPR-associated protein Csx16. (420 aa)    
Predicted Functional Partners:
SEB08992.1
CRISPR-associated protein Csx16.
 
      0.887
SEB09008.1
CRISPR-associated protein, TM1812 family.
 
     0.747
SEB02732.1
AAA ATPase domain-containing protein.
  
     0.740
SEA59242.1
AAA domain-containing protein, putative AbiEii toxin, Type IV TA system.
  
     0.711
SDZ94916.1
DNA phosphorothioation-associated putative methyltransferase.
  
     0.692
SEB08927.1
Hypothetical protein.
       0.686
SEB08937.1
Predicted transcriptional regulator.
       0.686
SEA12999.1
XisH protein.
  
     0.669
SDZ79096.1
Uncharacterized conserved protein.
 
     0.666
SEB08917.1
CRISPR type III-B/RAMP module RAMP protein Cmr6.
 
     0.652
Your Current Organism:
Thiothrix caldifontis
NCBI taxonomy Id: 525918
Other names: DSM 21228, T. caldifontis, Thiothrix caldifontis Chernousova et al. 2009, VKM B-2520, strain G1
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