Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Apre_0013 | Apre_0014 | Apre_0013 | Apre_0014 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | 0.797 |
Apre_0013 | Apre_0015 | Apre_0013 | Apre_0015 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | 0.762 |
Apre_0013 | Apre_0165 | Apre_0013 | Apre_0165 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | PFAM: lipopolysaccharide biosynthesis protein; KEGG: bca:BCE_5399 chain length determinant protein. | 0.758 |
Apre_0013 | Apre_0167 | Apre_0013 | Apre_0167 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | Hypothetical protein. | 0.756 |
Apre_0013 | Apre_0314 | Apre_0013 | Apre_0314 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | Hypothetical protein. | 0.754 |
Apre_0013 | Apre_0324 | Apre_0013 | Apre_0324 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | Hypothetical protein; KEGG: AGAP002737-PA. | 0.771 |
Apre_0013 | Apre_0408 | Apre_0013 | Apre_0408 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | KEGG: bca:BCE_3356 hypothetical protein. | 0.763 |
Apre_0013 | Apre_0524 | Apre_0013 | Apre_0524 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | PFAM: metallophosphoesterase. | 0.759 |
Apre_0013 | Apre_0897 | Apre_0013 | Apre_0897 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | KEGG: hypothetical protein. | 0.766 |
Apre_0013 | ureE | Apre_0013 | Apre_0721 | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.756 |
Apre_0014 | Apre_0013 | Apre_0014 | Apre_0013 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | 0.797 |
Apre_0014 | Apre_0165 | Apre_0014 | Apre_0165 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | PFAM: lipopolysaccharide biosynthesis protein; KEGG: bca:BCE_5399 chain length determinant protein. | 0.443 |
Apre_0014 | Apre_0167 | Apre_0014 | Apre_0167 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | Hypothetical protein. | 0.759 |
Apre_0014 | Apre_0314 | Apre_0014 | Apre_0314 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | Hypothetical protein. | 0.665 |
Apre_0014 | Apre_0324 | Apre_0014 | Apre_0324 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | Hypothetical protein; KEGG: AGAP002737-PA. | 0.703 |
Apre_0014 | Apre_0408 | Apre_0014 | Apre_0408 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | KEGG: bca:BCE_3356 hypothetical protein. | 0.712 |
Apre_0014 | Apre_0524 | Apre_0014 | Apre_0524 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | PFAM: metallophosphoesterase. | 0.702 |
Apre_0014 | Apre_0897 | Apre_0014 | Apre_0897 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | KEGG: hypothetical protein. | 0.711 |
Apre_0014 | ureE | Apre_0014 | Apre_0721 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.590 |
Apre_0015 | Apre_0013 | Apre_0015 | Apre_0013 | PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5. | PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein. | 0.762 |
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