STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0041TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: vch:VC2508 ornithine carbamoyltransferase. (336 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: bcy:Bcer98_0348 arginine deiminase.
 
 
 0.985
argG
KEGG: lpc:LPC_2852 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.975
Apre_0029
TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: ecf:ECH74115_4164 carbamate kinase ArcC homolog; Belongs to the carbamate kinase family.
 
 0.965
Apre_1429
KEGG: ssn:SSON_3025 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; Belongs to the carbamate kinase family.
 
 0.965
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 
0.903
Apre_0781
PFAM: aspartate transcarbamylase regulatory subunit; KEGG: vpa:VP2655 aspartate carbamoyltransferase regulatory subunit.
 
  
  0.845
pyrB
KEGG: vfm:VFMJ11_0396 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
  
0.841
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bcb:BCB4264_A4737 argininosuccinate lyase.
 
  
 0.770
argR
Arginine repressor, ArgR; Regulates arginine biosynthesis genes.
  
  
 0.660
Apre_0040
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: Transposase IS116/IS110/IS902 family protein.
       0.453
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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