STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0044PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: dps:DP3102 ABC transporter, ATP-binding protein. (251 aa)    
Predicted Functional Partners:
Apre_0043
PFAM: inner-membrane translocator; KEGG: bav:BAV2470 ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.981
Apre_0042
PFAM: protein of unknown function DUF534; KEGG: maq:Maqu_1089 hypothetical protein.
 
    0.956
Apre_0407
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3341 ABC transporter, ATP- binding protein.
 
     
0.631
Apre_0552
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ret:RHE_CH02374 putative multidrug resistance ABC transporter, ATP-binding and permease protein.
 
     
0.525
Apre_0045
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcr:BCAH187_A4756 transcriptional regulator, ArsR family.
       0.408
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.