Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0046PFAM: major facilitator superfamily MFS_1; KEGG: bce:BC3225 macrolide-efflux protein. (405 aa)    
Predicted Functional Partners:
Apre_0045
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcr:BCAH187_A4756 transcriptional regulator, ArsR family.
 
   
 0.877
Apre_0464
KEGG: erythrocyte binding protein.
  
   
 0.695
Apre_1094
PFAM: GCN5-related N-acetyltransferase; KEGG: vsa:VSAL_I0612 ribosomal-protein-alanine acetyltransferase.
 
     0.582
Apre_0884
KEGG: ban:BA2233 hypothetical protein.
  
   
 0.484
Apre_0014
PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5.
 
     0.449
Apre_0015
PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5.
 
     0.433
Apre_1122
PFAM: GCN5-related N-acetyltransferase; KEGG: vbsC; vicibactin acetylase protein.
  
     0.423
Apre_0383
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bcy:Bcer98_2394 PTS system, fructose subfamily, IIC subunit.
    
 
 0.421
Apre_0462
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC4279 high-affinity zinc uptake system ATP-binding protein ZnuC.
   
    0.414
Apre_0501
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS4183 cation ABC transporter, ATP- binding protein, putative.
   
    0.414
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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