STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0051PFAM: extracellular solute-binding protein family 1; KEGG: cko:CKO_02819 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Apre_0052
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component.
 
 
 0.996
Apre_0053
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_A1201 spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.962
Apre_0054
PFAM: glycosyl transferase group 1; KEGG: dol:Dole_2052 glycosyl transferase group 1.
 
     0.760
Apre_1708
PFAM: periplasmic binding protein; KEGG: ABC transporter substrate binding protein (iron).
 
  
 0.533
Apre_0050
PFAM: protein of unknown function DUF6 transmembrane; KEGG: yen:YE1601 exported membrane protein.
       0.517
potA
ABC transporter related; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
  
 0.456
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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