STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0054PFAM: glycosyl transferase group 1; KEGG: dol:Dole_2052 glycosyl transferase group 1. (398 aa)    
Predicted Functional Partners:
Apre_0052
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component.
 
    0.875
Apre_0053
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_A1201 spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
    0.825
Apre_0051
PFAM: extracellular solute-binding protein family 1; KEGG: cko:CKO_02819 hypothetical protein.
 
     0.760
Apre_0991
KEGG: hypothetical protein.
  
   
 0.652
Apre_1256
Transcriptional regulator, XRE family; KEGG: abu:Abu_0659 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.560
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
   
 0.549
Apre_0205
KEGG: dal:Dalk_0889 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.522
Apre_0788
KEGG: ftn:FTN_0513 glycogen branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain.
   
 0.522
Apre_1280
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.522
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 
 0.480
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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