STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0075PFAM: sugar isomerase (SIS); KEGG: bcr:BCAH187_A2108 putative tagatose-6- phosphate ketose/aldose isomerase. (377 aa)    
Predicted Functional Partners:
lacD
PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: bcr:BCAH187_A2111 tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
 
   
 0.942
Apre_0076
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bca:BCE_1903 GntR family transcriptional regulator.
 
  
 0.905
Apre_0077
KEGG: bcr:BCAH187_A2109 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.878
Apre_0078
1-phosphofructokinase; KEGG: bcr:BCAH187_A2110 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
   
 0.818
Apre_0200
protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; KEGG: sec:SC1824 sugar specific PTS family mannose- specific enzyme IIAB.
  
  
 0.737
Apre_0201
PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: stm:STM1831 mannose-specific enzyme IIC.
  
  
 0.577
Apre_1665
PFAM: PTS system fructose subfamily IIA component; KEGG: vvy:VVA1511 phosphotransferase system, mannose/fructose-specific component IIA.
 
  
 0.547
Apre_0664
Fmu (Sun) domain protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
   
    0.483
Apre_0506
PFAM: nucleoside 2-deoxyribosyltransferase.
  
     0.430
Apre_1675
protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: PTS system sorbose subfamily IIB component; KEGG: ppr:PBPRB1038 N-acetylgalactosamine-specific PTS system transporter subunit IIB.
 
  
 0.429
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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