STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0094KEGG: aci:ACIAD1456 hypothetical protein. (382 aa)    
Predicted Functional Partners:
Apre_0092
PFAM: fumarate lyase; KEGG: bha:BH1426 aspartate ammonia-lyase.
     
 0.799
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
 
     0.785
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.782
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.683
Apre_0165
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bca:BCE_5399 chain length determinant protein.
  
     0.672
Apre_0408
KEGG: bca:BCE_3356 hypothetical protein.
  
     0.666
Apre_0314
Hypothetical protein.
  
     0.648
Apre_0524
PFAM: metallophosphoesterase.
 
   
 0.618
Apre_0163
KEGG: conserved hypothetical protein; K10401 kinesin family member 18/19.
  
     0.595
Apre_0095
PFAM: MaoC domain protein dehydratase; KEGG: cti:RALTA_A1053 putative dehydratase, MaoC-like domain.
  
    0.590
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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