STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0106PFAM: Mg2 transporter protein CorA family protein; KEGG: gbm:Gbem_0267 magnesium and cobalt transport protein CorA. (335 aa)    
Predicted Functional Partners:
Apre_0105
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.712
Apre_0007
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bce:BC1002 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
    0.668
Apre_0009
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.
  
    0.660
Apre_0008
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bca:BCE_1085 serine-protein kinase RsbW.
  
    0.577
Apre_0103
PFAM: Chromate transporter; KEGG: chromate transporter; K07240 chromate transporter.
  
    0.570
Apre_0104
PFAM: Chromate transporter; KEGG: gur:Gura_1288 chromate transporter.
  
    0.570
Apre_0754
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: msu:MS1293 MMT1 protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
  
 0.448
Apre_1211
PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ban:BA5431 hypothetical protein.
  
    0.430
Apre_0101
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein.
  
  
 0.400
Apre_0102
KEGG: hypothetical protein.
       0.400
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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