Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Apre_0114TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; KEGG: tgr:Tgr7_1512 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. (357 aa)    
Predicted Functional Partners:
Apre_0113
Hypothetical protein; KEGG: mgm:Mmc1_1169 poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit.
 
  
 0.994
Apre_0115
PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A2964 MaoC-like dehydratase.
 
  
 0.984
Apre_1351
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: mpo:Mpop_3667 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.532
Apre_0826
Hypothetical protein; KEGG: nis:NIS_0449 phage-related DNA-binding protein.
  
     0.435
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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