STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0121Potassium uptake protein, TrkH family; KEGG: bha:BH0598 Na+-transporting ATP synthase; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter. (449 aa)    
Predicted Functional Partners:
Apre_0122
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: ban:BA4191 TrkA family potassium uptake protein.
 
 
 0.993
Apre_1120
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: TrkA-N domain protein.
  
 
 0.874
Apre_1042
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
   
 
 0.769
Apre_1399
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dal:Dalk_0380 TrkA-N domain protein.
  
 
 0.751
Apre_0120
PFAM: LemA family protein; KEGG: cha:CHAB381_1739 LemA family protein.
     
 0.594
Apre_0119
Putative membrane protein; KEGG: hypothetical protein.
       0.527
Apre_1063
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4144 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
   
 
 0.480
Apre_0123
PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: bce:BC1528 hypothetical protein.
       0.417
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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