STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0164KEGG: sbl:Sbal_2883 hypothetical protein. (373 aa)    
Predicted Functional Partners:
Apre_0165
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bca:BCE_5399 chain length determinant protein.
  
  
 0.793
Apre_1269
PFAM: sugar transferase; KEGG: bce:BC5270 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.578
Apre_1493
PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase.
  
  
 0.578
Apre_1272
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
  
    0.500
Apre_0162
KEGG: scl:sce1452 hypothetical protein.
       0.406
Apre_0163
KEGG: conserved hypothetical protein; K10401 kinesin family member 18/19.
       0.406
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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