STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0165PFAM: lipopolysaccharide biosynthesis protein; KEGG: bca:BCE_5399 chain length determinant protein. (386 aa)    
Predicted Functional Partners:
Apre_0248
ATPase involved in chromosome partitioning-like protein; KEGG: rce:RC1_4006 succinoglycan biosynthesis transport protein ExoP.
 
 
 0.874
Apre_0542
Protein-tyrosine-phosphatase; PFAM: PHP domain protein; KEGG: bsu:BSU36240 hypothetical protein.
 
 
 0.869
Apre_0541
TIGRFAM: capsular exopolysaccharide family; KEGG: bsu:BSU36250 hypothetical protein.
 
 
 0.843
Apre_0163
KEGG: conserved hypothetical protein; K10401 kinesin family member 18/19.
 
     0.838
Apre_0164
KEGG: sbl:Sbal_2883 hypothetical protein.
  
    0.797
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.767
Apre_0013
PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein.
  
     0.758
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
     0.752
Apre_0408
KEGG: bca:BCE_3356 hypothetical protein.
  
     0.752
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
     0.744
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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