STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0168PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0290 ABC transporter ATP-binding protein. (253 aa)    
Predicted Functional Partners:
Apre_0167
Hypothetical protein.
 
     0.948
Apre_0215
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK1718 multidrug ABC transporter, ATP- binding protein.
  
     0.588
Apre_0170
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hpj:jhp1141 putative ABC transporter, ATP- binding protein.
 
    
0.555
Apre_0169
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_1077 regulatory protein GntR HTH.
       0.545
Apre_0287
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP1995 ABC transporter, ATP-binding protein.
  
     0.537
Apre_0171
KEGG: hypothetical protein.
       0.532
Apre_0501
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS4183 cation ABC transporter, ATP- binding protein, putative.
  
     0.445
Apre_0687
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO0891 peptide ABC transporter ATP- binding protein.
  
     0.423
Apre_0228
ABC-type Na+ efflux pump permease component-like protein; KEGG: bha:BH1167 hypothetical protein.
  
  
 0.418
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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