STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0169Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_1077 regulatory protein GntR HTH. (123 aa)    
Predicted Functional Partners:
Apre_0170
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hpj:jhp1141 putative ABC transporter, ATP- binding protein.
 
    0.973
Apre_0171
KEGG: hypothetical protein.
  
  
 0.879
Apre_1480
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_1078 ABC transporter-related protein.
 
    0.871
Apre_0191
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0651 GntR family transcriptional regulator.
 
     0.751
Apre_0225
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_1077 regulatory protein GntR HTH.
  
     0.741
Apre_0192
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0652 ABC transporter ATP-binding protein.
 
    0.689
Apre_1479
Hypothetical protein; KEGG: bba:Bd0861 pilus biogenesis protein and ABC- type transporter.
  
  
 0.673
Apre_0168
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0290 ABC transporter ATP-binding protein.
       0.545
Apre_0167
Hypothetical protein.
       0.534
Apre_1309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A1804 ABC transporter, ATP- binding protein.
  
    0.516
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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