STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0181Conserved hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. (198 aa)    
Predicted Functional Partners:
Apre_0182
PFAM: protein of unknown function UPF0079; KEGG: protein of unknown function UPF0079; K06925.
       0.596
Apre_0183
PFAM: peptidase M22 glycoprotease; KEGG: bha:BH0546 glycoprotein endopeptidase.
       0.591
Apre_0184
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.591
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.591
Apre_0990
PFAM: protein of unknown function DUF988; KEGG: bcy:Bcer98_1323 hypothetical protein.
  
   
 0.569
Apre_0186
Hypothetical protein.
       0.555
Apre_0187
PFAM: peptidase S41; KEGG: similar to Interphotoreceptor retinoid- binding protein precursor (IRBP) (Interstitial retinol-binding protein).
       0.555
Apre_0166
TIGRFAM: proton-coupled thiamine transporter YuaJ; KEGG: bsu:BSU30990 hypothetical protein.
  
   
 0.529
Apre_1417
PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein.
 
   
 0.473
Apre_0579
Putative membrane protein.
  
   
 0.465
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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