STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0199PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; KEGG: msu:MS1414 MviM protein. (326 aa)    
Predicted Functional Partners:
Apre_0198
Hypothetical protein.
       0.773
Apre_1595
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7509 xylose isomerase domain-containing protein.
 
  
 0.738
Apre_1271
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.675
Apre_0201
PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: stm:STM1831 mannose-specific enzyme IIC.
 
     0.644
Apre_0200
protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; KEGG: sec:SC1824 sugar specific PTS family mannose- specific enzyme IIAB.
 
     0.631
Apre_0202
PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: spe:Spro_2815 mannose-specific PTS system protein IID.
 
     0.631
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); t-RNA- binding domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bar:GBAA0076 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.613
Apre_0203
PFAM: protein of unknown function DUF956.
 
     0.600
Apre_1380
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.591
Apre_1598
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.591
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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