STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0208PFAM: protein of unknown function DUF951; KEGG: ban:BA5725 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Apre_0207
PFAM: MscS Mechanosensitive ion channel; KEGG: rlt:Rleg2_3228 MscS mechanosensitive ion channel.
  
    0.809
Apre_0205
KEGG: dal:Dalk_0889 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
       0.782
Apre_0206
PFAM: lipolytic protein G-D-S-L family; KEGG: swd:Swoo_3734 GDSL family lipase.
       0.782
Apre_0608
PFAM: protein of unknown function DUF448; KEGG: bsu:BSU16610 hypothetical protein.
  
     0.729
Apre_0937
PFAM: protein of unknown function DUF965; KEGG: bsu:BSU27400 hypothetical protein; Belongs to the UPF0297 family.
  
     0.711
Apre_0204
TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: translation elongation factor G; K02355 elongation factor EF-G.
       0.684
Apre_1134
PFAM: protein of unknown function DUF633; KEGG: bat:BAS4192 hypothetical protein.
  
     0.587
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.557
Apre_1041
PFAM: protein of unknown function DUF322; KEGG: bha:BH2499 hypothetical protein.
  
     0.531
Apre_1305
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.469
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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