STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0211PFAM: band 7 protein; SMART: band 7 protein; KEGG: sml:Smlt1263 putative transmembrane protein. (352 aa)    
Predicted Functional Partners:
Apre_0210
KEGG: bar:GBAA0300 hypothetical protein.
 
  
 0.985
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.985
Apre_0056
PFAM: Rhomboid family protein; KEGG: bsu:BSU24870 hypothetical protein.
   
 0.832
Apre_1281
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: bha:BH1275 uridine kinase.
   
  0.717
Apre_1086
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1844 NADP-reducing hydrogenase chain C.
   
 
 0.634
Apre_0212
Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: pde:Pden_3004 peptidase S15.
  
    0.564
Apre_1736
PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.
  
 
 0.537
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.521
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.515
Apre_0068
Hypothetical protein.
  
    0.480
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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