STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0231TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA4428 sugar phosphatase. (273 aa)    
Predicted Functional Partners:
Apre_0232
PFAM: beta-lactamase domain protein; KEGG: bsu:BSU40370 hypothetical protein.
       0.782
Apre_0233
PFAM: PP-loop domain protein; KEGG: pca:Pcar_0671 PP family ATPase; Belongs to the TtcA family.
       0.782
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.782
Apre_0235
PFAM: methyladenine glycosylase; KEGG: sus:Acid_0536 DNA-3-methyladenine glycosylase I.
       0.782
Apre_0230
Putative transcriptional regulator, ModE family; PFAM: regulatory protein LysR; KEGG: wsu:WS0837 hypothetical protein.
     
 0.555
Apre_0055
Glycerate kinase; KEGG: ccv:CCV52592_0612 glycerate kinase 1; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
     0.408
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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