STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0243PFAM: alpha amylase catalytic region; Beta- galactosidase domain protein; SMART: alpha amylase catalytic sub domain; KEGG: vvy:VVA0760 glycosidase. (536 aa)    
Predicted Functional Partners:
Apre_0242
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bcb:BCB4264_A4122 sugar ABC transporter, ATP- binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.590
Apre_0238
PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU32600 hypothetical protein.
  
  
 0.563
Apre_0872
KEGG: bca:BCE_2761 pullulanase, putative; TIGRFAM: pullulanase, type I; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
 0.558
Apre_0240
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7002 ABC transporter, permease protein.
 
  
 0.512
Apre_0241
KEGG: dol:Dole_0651 sucrose phosphorylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. Sucrose phosphorylase subfamily.
       0.511
Apre_0237
PFAM: glycoside hydrolase clan GH-D; KEGG: bha:BH2223 alpha-galactosidase.
  
  
 0.510
Apre_0239
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4548 binding-protein-dependent transport systems inner membrane component.
  
  
 0.508
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.415
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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