STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0247PFAM: lipopolysaccharide biosynthesis protein; KEGG: GJ16854 gene product from transcript GJ16854- RA. (312 aa)    
Predicted Functional Partners:
Apre_0248
ATPase involved in chromosome partitioning-like protein; KEGG: rce:RC1_4006 succinoglycan biosynthesis transport protein ExoP.
  
 
 0.884
Apre_0245
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2008 glycosyl transferase family protein.
       0.782
Apre_0246
KEGG: ecq:ECED1_2381 hypothetical protein, putative glycosyltransferase.
       0.782
Apre_0249
PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: bcy:Bcer98_1493 NLP/P60 protein.
       0.782
Apre_0542
Protein-tyrosine-phosphatase; PFAM: PHP domain protein; KEGG: bsu:BSU36240 hypothetical protein.
  
 
 0.569
Apre_0244
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
       0.533
Apre_0541
TIGRFAM: capsular exopolysaccharide family; KEGG: bsu:BSU36250 hypothetical protein.
  
 
 0.503
Apre_1525
ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.503
Apre_0250
Hypothetical protein.
       0.491
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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