Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Apre_0271PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_1722 biotin synthase. (347 aa)    
Predicted Functional Partners:
Apre_0272
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: sfu:Sfum_1843 small GTP-binding protein.
   
 0.934
Apre_0270
KEGG: bcy:Bcer98_0415 hypothetical protein.
       0.771
Apre_1085
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; 4Fe-4S ferredoxin iron- sulfur binding domain protein; ferredoxin; KEGG: pca:Pcar_1633 NAD-reducing iron-only hydrogenase large subunit.
 
  
 0.708
Apre_1371
PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0725 hydrogenase-like.
 
  
 0.570
Apre_0267
Magnesium transporter; Acts as a magnesium transporter.
       0.502
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
  
  
 0.500
Apre_1161
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.489
Apre_0269
Hypothetical protein.
  
    0.488
Apre_0507
TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_2216 NAD synthetase.
     
 0.482
Apre_0268
PFAM: acyl-ACP thioesterase; KEGG: dal:Dalk_2643 acyl-ACP thioesterase.
       0.473
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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