STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0286PFAM: Methicillin resistance protein; KEGG: sat:SYN_01477 pentaglycine interpeptide bridge formation protein. (341 aa)    
Predicted Functional Partners:
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
   
 
 0.924
Apre_0985
PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: bcy:Bcer98_0233 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase.
  
 
 0.917
Apre_0984
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: pen:PSEEN1383 cobyric acid synthase.
     
  0.900
Apre_0287
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP1995 ABC transporter, ATP-binding protein.
       0.782
Apre_0288
Hypothetical protein.
       0.782
Apre_0289
PFAM: protein of unknown function DUF214; KEGG: bha:BH3121 hypothetical protein.
       0.773
Apre_0290
Hypothetical protein.
       0.568
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.568
Apre_0292
TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: GE10903 gene product from transcript GE10903- RA.
       0.550
Apre_0285
PFAM: NUDIX hydrolase; KEGG: bcr:BCAH187_A1937 MutT/NUDIX family protein.
       0.537
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.